Kostenko D. O. (Postgraduate, junior researcher
National Research Nuclear University MEPhI
(Moscow Engineering Physics Institute),
The Federal Research Centre “Fundamentals of Biotechnology”
of the Russian Academy of Sciences (Moscow)
)
Korotkov E. V. (PhD, professor
National Research Nuclear University MEPhI
(Moscow Engineering Physics Institute),
The Federal Research Centre “Fundamentals of Biotechnology”
of the Russian Academy of Sciences (Moscow)
)
Korotkova M. A. (PhD, docent
National Research Nuclear University MEPhI
(Moscow Engineering Physics Institute)
)
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The search for the optimal multiple sequence alignment requires a large amount of computing resources. Previously, we developed the MAHDS method, which is capable of constructing statistically significant alignments of weakly homologous sequences. This paper presents the architecture and some details of the software implementation of the system for constructing multiple alignments using this method. An effective hierarchical approach used for distributing computations in an MPI cluster environment is described. An approach is proposed to ensure secure access of the end users of the system to the computing cluster resources.
Keywords:multiple sequence alignment, distributed computing, computing cluster, MPI, thread pool.
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Read the full article …
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Citation link:
Kostenko D. O., Korotkov E. V., Korotkova M. A. DISTRIBUTED SYSTEM FOR MULTIPLE SEQUENCE ALIGNMENT BY MEANS OF MAHDS METHOD // Современная наука: актуальные проблемы теории и практики. Серия: Естественные и Технические Науки. -2025. -№05/2. -С. 73-78 DOI 10.37882/2223-2966.2025.05-2.13 |
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